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Sample GSM685474 Query DataSets for GSM685474
Status Public on Apr 18, 2012
Title Uveal melanoma 11
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 460.61 P 0.000753643
AFFX-BioB-M_at 769.713 P 0.000581214
AFFX-BioB-3_at 304.703 P 0.000224668
AFFX-BioC-5_at 1349.58 P 5.16732e-05
AFFX-BioC-3_at 1543.07 P 4.42873e-05
AFFX-BioDn-5_at 2923.27 P 4.42873e-05
AFFX-BioDn-3_at 6354.14 P 9.4506e-05
AFFX-CreX-5_at 15835.3 P 4.42873e-05
AFFX-CreX-3_at 20219.4 P 4.42873e-05
AFFX-DapX-5_at 7.85237 A 0.783476
AFFX-DapX-M_at 47.8026 A 0.470235
AFFX-DapX-3_at 17.9868 A 0.686292
AFFX-LysX-5_at 8.30613 A 0.922016
AFFX-LysX-M_at 38.1759 A 0.544587
AFFX-LysX-3_at 34.8862 A 0.147939
AFFX-PheX-5_at 4.969 A 0.932322
AFFX-PheX-M_at 9.83779 A 0.834139
AFFX-PheX-3_at 23.0463 A 0.699394
AFFX-ThrX-5_at 12.5612 A 0.699394
AFFX-ThrX-M_at 3.18884 A 0.949786

Total number of rows: 54675

Table truncated, full table size 1632 Kbytes.




Supplementary file Size Download File type/resource
GSM685474_MU11.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM685474_MU11.CHP.gz 298.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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