|
Status |
Public on Sep 17, 2013 |
Title |
SCC_G31_expression |
Sample type |
RNA |
|
|
Source name |
Squamous cell carcinoma
|
Organism |
Homo sapiens |
Characteristics |
tissue: Squamous cell carcinoma type: SCC
|
Growth protocol |
Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
|
Extracted molecule |
total RNA |
Extraction protocol |
TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Standard Affymetrix labelling protocol
|
|
|
Hybridization protocol |
Standard Affymetrix hybridisation protocol
|
Scan protocol |
Standard Affymetrix scanning protocol
|
Description |
G31
|
Data processing |
Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
|
|
|
Submission date |
Mar 04, 2011 |
Last update date |
Sep 17, 2013 |
Contact name |
Ian Roberts |
E-mail(s) |
ian.roberts@cantab.net
|
Phone |
0044 1223 763 279
|
Organization name |
Hutchison MRC Research Centre
|
Department |
Cancer Cell Unit
|
Lab |
Coleman
|
Street address |
Hills Road
|
City |
Cambridge |
ZIP/Postal code |
CB2 0XZ |
Country |
United Kingdom |
|
|
Platform ID |
GPL570 |
Series (2) |
GSE27333 |
Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome |
GSE27678 |
Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix |
|