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Sample GSM685543 Query DataSets for GSM685543
Status Public on Sep 17, 2013
Title CellLine_MS751_expression
Sample type RNA
 
Source name metastatic site: lymph node
Organism Homo sapiens
Characteristics cell line: MS751
type: CellLine
Growth protocol Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
Extracted molecule total RNA
Extraction protocol TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix labelling protocol
 
Hybridization protocol Standard Affymetrix hybridisation protocol
Scan protocol Standard Affymetrix scanning protocol
Description MS751
Data processing Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
 
Submission date Mar 04, 2011
Last update date Sep 17, 2013
Contact name Ian Roberts
E-mail(s) ian.roberts@cantab.net
Phone 0044 1223 763 279
Organization name Hutchison MRC Research Centre
Department Cancer Cell Unit
Lab Coleman
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL570
Series (2)
GSE27333 Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome
GSE27678 Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix

Data table header descriptions
ID_REF
VALUE log 2 RMA normalized signal

Data table
ID_REF VALUE
1007_s_at 9.24587334
1053_at 9.068872169
117_at 4.931901024
121_at 7.135717018
1255_g_at 2.89970229
1294_at 5.606246912
1316_at 4.560337469
1320_at 3.865358501
1405_i_at 3.324003421
1431_at 3.154678791
1438_at 5.802148324
1487_at 8.427936295
1494_f_at 4.639077724
1552256_a_at 10.2230037
1552257_a_at 7.416112527
1552258_at 3.781207235
1552261_at 3.661957267
1552263_at 5.25989998
1552264_a_at 8.240345886
1552266_at 2.623099137

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM685543.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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