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Sample GSM685602 Query DataSets for GSM685602
Status Public on Apr 18, 2012
Title Uveal melanoma 8
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 533.063 P 0.000509415
AFFX-BioB-M_at 654.026 P 6.02111e-05
AFFX-BioB-3_at 354.848 P 0.000258358
AFFX-BioC-5_at 1444.35 P 5.16732e-05
AFFX-BioC-3_at 1577.71 P 4.42873e-05
AFFX-BioDn-5_at 3561.38 P 4.42873e-05
AFFX-BioDn-3_at 6133.94 P 5.16732e-05
AFFX-CreX-5_at 15499.9 P 5.16732e-05
AFFX-CreX-3_at 18711.6 P 4.42873e-05
AFFX-DapX-5_at 46.3168 A 0.0956669
AFFX-DapX-M_at 24.1662 A 0.699394
AFFX-DapX-3_at 11.408 A 0.824672
AFFX-LysX-5_at 3.01592 A 0.916426
AFFX-LysX-M_at 46.6105 A 0.41138
AFFX-LysX-3_at 40.5397 A 0.102145
AFFX-PheX-5_at 3.41709 A 0.932322
AFFX-PheX-M_at 6.3018 A 0.932322
AFFX-PheX-3_at 62.2224 A 0.39692
AFFX-ThrX-5_at 6.0231 A 0.960339
AFFX-ThrX-M_at 26.3453 A 0.340661

Total number of rows: 54675

Table truncated, full table size 1639 Kbytes.




Supplementary file Size Download File type/resource
GSM685602_MU8.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM685602_MU8.CHP.gz 296.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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