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Sample GSM685603 Query DataSets for GSM685603
Status Public on Apr 18, 2012
Title Uveal melanoma 4
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: left
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 539.891 P 0.000258358
AFFX-BioB-M_at 648.672 P 4.42873e-05
AFFX-BioB-3_at 374.66 P 0.000340305
AFFX-BioC-5_at 1287.36 P 4.42873e-05
AFFX-BioC-3_at 1593.05 P 4.42873e-05
AFFX-BioDn-5_at 3767.2 P 4.42873e-05
AFFX-BioDn-3_at 5585.4 P 4.42873e-05
AFFX-CreX-5_at 14981.6 P 5.16732e-05
AFFX-CreX-3_at 17400.1 P 4.42873e-05
AFFX-DapX-5_at 15.3503 A 0.354441
AFFX-DapX-M_at 7.24893 A 0.960339
AFFX-DapX-3_at 4.48549 A 0.897933
AFFX-LysX-5_at 8.26195 A 0.760937
AFFX-LysX-M_at 3.47182 A 0.897855
AFFX-LysX-3_at 12.975 A 0.559354
AFFX-PheX-5_at 1.55067 A 0.963431
AFFX-PheX-M_at 4.4918 A 0.916408
AFFX-PheX-3_at 86.5944 A 0.0726999
AFFX-ThrX-5_at 5.4479 A 0.957038
AFFX-ThrX-M_at 4.01749 A 0.9273

Total number of rows: 54675

Table truncated, full table size 1646 Kbytes.




Supplementary file Size Download File type/resource
GSM685603_MU4.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM685603_MU4.CHP.gz 298.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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