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GEO accession:
Sample GSM685650
Query DataSets for GSM685650
Status
Public on Apr 18, 2012
Title
Uveal melanoma 5
Sample type
RNA
Source name
Uveal melanoma
Organism
Homo sapiens
Characteristics
tissue: uveal melanoma
gender: male
eye: right
Extracted molecule
total RNA
Extraction protocol
Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Label
biotin
Label protocol
Standard Affymetrix procedures
Hybridization protocol
Standard Affymetrix procedures
Scan protocol
Standard Affymetrix procedures
Data processing
Affymetrix Expression Console
Submission date
Mar 04, 2011
Last update date
Apr 18, 2012
Contact name
Valentina Mirisola
E-mail(s)
valentina.mirisola@istge.it
Organization name
National Cancer Institute
Department
Functiona Genomics
Street address
Largo Benzi 10
City
Genova
ZIP/Postal code
16132
Country
Italy
Platform ID
GPL570
Series (1)
GSE27831
Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression
Data table header descriptions
ID_REF
VALUE
ExpressionStat 5.0
ABS_CALL
indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
467.48
P
0.000753643
AFFX-BioB-M_at
646.415
P
0.000195116
AFFX-BioB-3_at
418.211
P
0.000389797
AFFX-BioC-5_at
1057.75
P
5.16732e-05
AFFX-BioC-3_at
1429.09
P
4.42873e-05
AFFX-BioDn-5_at
3697.99
P
4.42873e-05
AFFX-BioDn-3_at
6194.82
P
5.16732e-05
AFFX-CreX-5_at
14535
P
5.16732e-05
AFFX-CreX-3_at
18141.4
P
4.42873e-05
AFFX-DapX-5_at
13.712
A
0.749223
AFFX-DapX-M_at
70.4153
A
0.340661
AFFX-DapX-3_at
6.13106
A
0.945787
AFFX-LysX-5_at
8.79843
A
0.724854
AFFX-LysX-M_at
23.1661
A
0.631573
AFFX-LysX-3_at
9.07186
A
0.354453
AFFX-PheX-5_at
28.5839
A
0.645559
AFFX-PheX-M_at
7.63151
A
0.949786
AFFX-PheX-3_at
28.3097
A
0.48511
AFFX-ThrX-5_at
9.12183
A
0.824672
AFFX-ThrX-M_at
28.46
A
0.51489
Total number of rows:
54675
Table truncated, full table size
1635 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM685650_MU5.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
GSM685650_MU5.CHP.gz
299.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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