NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM686078 Query DataSets for GSM686078
Status Public on Mar 08, 2011
Title Wild Type MAECs: 1103ZG0005
Sample type RNA
 
Source name Wild Type MAECs: 1103ZG0005
Organism Mus musculus
Characteristics cell type: mouse aorta endothelial cells
genotype/variation: Wild type
strain: C57BL/6J
Growth protocol MAECs grown to 80% confluence in six-well plates were made quiescent in serum-free DMEM for 12 h and then cultured in 10% FBS DMEM for 12 h.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with TrizolĀ® reagent and purified by Rneasy Mini kit.
Label biotin
Label protocol Affymetrix standard protocol was used.
 
Hybridization protocol Affymetrix standard protocol was used.
Scan protocol GeneChips were scanned using GeneArray Scanner 3000 and analyzed with the Affymetrix GeneChip Command Console.
Data processing The data were analyzed and normalized with Affymetrix Expression Console software (program-version: 1.1.2800.19935, affymetrix-algorithm-name = rma-gene-default).
 
Submission date Mar 07, 2011
Last update date Mar 08, 2011
Contact name Xinghua Lin
E-mail(s) xlin@mmc.edu
Phone 615-327-6537
Fax 615-327-6537
Organization name Meharry Medical College
Department Physiology
Street address 1005 D. B. Todd Jr. Blvd
City Nashville
State/province Tennessee
ZIP/Postal code 37208
Country USA
 
Platform ID GPL6246
Series (1)
GSE27701 Genes Express in Catalase Overexpression MAECs

Data table header descriptions
ID_REF
VALUE RMA data

Data table
ID_REF VALUE
10338001 12.2909
10338002 7.11282
10338003 10.4596
10338004 9.58039
10338005 2.89185
10338006 3.29065
10338007 3.79394
10338008 4.34514
10338009 10.1572
10338010 3.01559
10338011 6.40076
10338012 3.06127
10338013 2.73301
10338014 2.78444
10338015 2.69774
10338016 8.8554
10338017 13.5953
10338018 7.67412
10338019 5.64514
10338020 9.88677

Total number of rows: 35557

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM686078_1103ZG0005-Wild_Type_MAECs-MoGene.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM686078_1103ZG0005-Wild_Type_MAECs-MoGene.GRD.gz 2.7 Mb (ftp)(http) GRD
GSM686078_1103ZG0005-Wild_Type_MAECs-MoGene.rma-gene-default.chp.gz 270.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap