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Sample GSM686080 Query DataSets for GSM686080
Status Public on Mar 08, 2011
Title hcatTg MAECs: 1103ZG0006
Sample type RNA
 
Source name hcatTg MAECs: 1103ZG0006
Organism Mus musculus
Characteristics cell type: mouse aorta endothelial cells
genotype/variation: hcatTg
strain: C57BL/6J
Growth protocol MAECs grown to 80% confluence in six-well plates were made quiescent in serum-free DMEM for 12 h and then cultured in 10% FBS DMEM for 12 h.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with TrizolĀ® reagent and purified by Rneasy Mini kit.
Label biotin
Label protocol Affymetrix standard protocol was used.
 
Hybridization protocol Affymetrix standard protocol was used.
Scan protocol GeneChips were scanned using GeneArray Scanner 3000 and analyzed with the Affymetrix GeneChip Command Console.
Data processing The data were analyzed and normalized with Affymetrix Expression Console software (program-version: 1.1.2800.19935, affymetrix-algorithm-name = rma-gene-default).
 
Submission date Mar 07, 2011
Last update date Mar 08, 2011
Contact name Xinghua Lin
E-mail(s) xlin@mmc.edu
Phone 615-327-6537
Fax 615-327-6537
Organization name Meharry Medical College
Department Physiology
Street address 1005 D. B. Todd Jr. Blvd
City Nashville
State/province Tennessee
ZIP/Postal code 37208
Country USA
 
Platform ID GPL6246
Series (1)
GSE27701 Genes Express in Catalase Overexpression MAECs

Data table header descriptions
ID_REF
VALUE RMA data

Data table
ID_REF VALUE
10338001 12.1607
10338002 7.13495
10338003 10.2931
10338004 9.35161
10338005 2.86854
10338006 3.26494
10338007 3.79266
10338008 4.40039
10338009 9.94541
10338010 3.00322
10338011 6.36347
10338012 3.03627
10338013 2.73531
10338014 2.76491
10338015 2.7301
10338016 8.71606
10338017 13.3224
10338018 7.67284
10338019 5.70977
10338020 9.74801

Total number of rows: 35557

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM686080_1103ZG0006-hCatTg_MAECs-MoGene.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM686080_1103ZG0006-hCatTg_MAECs-MoGene.GRD.gz 2.8 Mb (ftp)(http) GRD
GSM686080_1103ZG0006-hCatTg_MAECs-MoGene.rma-gene-default.chp.gz 270.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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