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Sample GSM686961 Query DataSets for GSM686961
Status Public on Apr 18, 2012
Title Uveal melanoma 17
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1261.51 P 0.0103167
AFFX-BioB-M_at 1782.94 P 0.00227496
AFFX-BioB-3_at 1021.92 P 0.00556451
AFFX-BioC-5_at 2590.09 P 0.000856509
AFFX-BioC-3_at 3523.53 P 4.42873e-05
AFFX-BioDn-5_at 4749.47 P 4.42873e-05
AFFX-BioDn-3_at 19794.1 P 0.000224668
AFFX-CreX-5_at 32812.2 P 5.16732e-05
AFFX-CreX-3_at 52761.9 P 4.42873e-05
AFFX-DapX-5_at 27.9458 A 0.804734
AFFX-DapX-M_at 58.4528 A 0.897835
AFFX-DapX-3_at 36.9117 A 0.949771
AFFX-LysX-5_at 132.047 A 0.440646
AFFX-LysX-M_at 77.4227 A 0.712257
AFFX-LysX-3_at 64.9769 A 0.216524
AFFX-PheX-5_at 30.4533 A 0.9273
AFFX-PheX-M_at 29.4496 A 0.910522
AFFX-PheX-3_at 216.697 A 0.39692
AFFX-ThrX-5_at 20.6096 A 0.978098
AFFX-ThrX-M_at 29.1347 A 0.559354

Total number of rows: 54675

Table truncated, full table size 1598 Kbytes.




Supplementary file Size Download File type/resource
GSM686961_MU_17.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM686961_MU_17.CHP.gz 493.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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