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Sample GSM686986 Query DataSets for GSM686986
Status Public on Apr 18, 2012
Title Uveal melanoma 33
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: left
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 442.316 P 0.0032123
AFFX-BioB-M_at 679.539 P 0.000445901
AFFX-BioB-3_at 379.071 P 8.14279e-05
AFFX-BioC-5_at 1211.85 P 0.000126798
AFFX-BioC-3_at 1447.04 P 4.42873e-05
AFFX-BioDn-5_at 2833.61 P 4.42873e-05
AFFX-BioDn-3_at 4783.19 P 6.02111e-05
AFFX-CreX-5_at 12611.9 P 4.42873e-05
AFFX-CreX-3_at 17888.7 P 4.42873e-05
AFFX-DapX-5_at 38.3582 A 0.216524
AFFX-DapX-M_at 54.6044 A 0.262827
AFFX-DapX-3_at 40.2838 A 0.645547
AFFX-LysX-5_at 8.73245 A 0.760937
AFFX-LysX-M_at 89.9885 A 0.139482
AFFX-LysX-3_at 43.6982 A 0.287743
AFFX-PheX-5_at 5.62582 A 0.891021
AFFX-PheX-M_at 5.32827 A 0.987453
AFFX-PheX-3_at 13.9081 A 0.794268
AFFX-ThrX-5_at 13.3737 A 0.824672
AFFX-ThrX-M_at 10.4699 A 0.843268

Total number of rows: 54675

Table truncated, full table size 1634 Kbytes.




Supplementary file Size Download File type/resource
GSM686986_MU_33.CEL.gz 5.3 Mb (ftp)(http) CEL
GSM686986_MU_33.CHP.gz 485.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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