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Sample GSM686987 Query DataSets for GSM686987
Status Public on Apr 18, 2012
Title Uveal melanoma 32
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 466.396 P 0.000972149
AFFX-BioB-M_at 806.932 P 0.000753643
AFFX-BioB-3_at 389.586 P 4.42873e-05
AFFX-BioC-5_at 1421.34 P 7.00668e-05
AFFX-BioC-3_at 1710.56 P 5.16732e-05
AFFX-BioDn-5_at 3425.05 P 4.42873e-05
AFFX-BioDn-3_at 6484.2 P 8.14279e-05
AFFX-CreX-5_at 15893.6 P 4.42873e-05
AFFX-CreX-3_at 22633.6 P 4.42873e-05
AFFX-DapX-5_at 9.41311 A 0.574038
AFFX-DapX-M_at 12.1183 A 0.916408
AFFX-DapX-3_at 12.379 A 0.921998
AFFX-LysX-5_at 7.34377 A 0.60308
AFFX-LysX-M_at 75.1635 A 0.425962
AFFX-LysX-3_at 70.015 A 0.0676614
AFFX-PheX-5_at 3.67313 A 0.99156
AFFX-PheX-M_at 9.1174 A 0.876428
AFFX-PheX-3_at 45.1288 A 0.440646
AFFX-ThrX-5_at 10.5907 A 0.737173
AFFX-ThrX-M_at 51.4265 A 0.470241

Total number of rows: 54675

Table truncated, full table size 1630 Kbytes.




Supplementary file Size Download File type/resource
GSM686987_MU_32.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM686987_MU_32.CHP.gz 487.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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