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Sample GSM686990 Query DataSets for GSM686990
Status Public on Apr 18, 2012
Title Uveal melanoma 40
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 184.057 P 0.00762003
AFFX-BioB-M_at 301.832 P 0.00686653
AFFX-BioB-3_at 138.089 P 0.0429619
AFFX-BioC-5_at 589.715 P 0.000445901
AFFX-BioC-3_at 588.406 P 5.16732e-05
AFFX-BioDn-5_at 1390.32 P 4.42873e-05
AFFX-BioDn-3_at 2638.45 P 0.000258358
AFFX-CreX-5_at 6101.57 P 4.42873e-05
AFFX-CreX-3_at 9435.68 P 4.42873e-05
AFFX-DapX-5_at 24.9632 A 0.58862
AFFX-DapX-M_at 25.9533 A 0.645547
AFFX-DapX-3_at 7.8988 A 0.860518
AFFX-LysX-5_at 9.41879 A 0.617401
AFFX-LysX-M_at 44.1402 A 0.440646
AFFX-LysX-3_at 37.5768 A 0.262827
AFFX-PheX-5_at 10.5967 A 0.712257
AFFX-PheX-M_at 5.87751 A 0.941556
AFFX-PheX-3_at 20.5085 A 0.783476
AFFX-ThrX-5_at 7.09656 A 0.949771
AFFX-ThrX-M_at 32.4354 A 0.672921

Total number of rows: 54675

Table truncated, full table size 1634 Kbytes.




Supplementary file Size Download File type/resource
GSM686990_MU_40.CEL.gz 5.4 Mb (ftp)(http) CEL
GSM686990_MU_40.CHP.gz 486.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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