|
| Status |
Public on Feb 20, 2023 |
| Title |
Monkey exosomes - Control 2, M |
| Sample type |
SRA |
| |
|
| Source name |
plasma exosomes
|
| Organism |
Macaca mulatta |
| Characteristics |
age: 4.46
|
| Treatment protocol |
Ribogone
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRIzol extraction protocol
RNA libraries were prepared for sequencing using standard Illumina protocols
ssRNA-seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
alignment (STAR)
counts stranded reads aligned to MacaM genome (featureCounts)
determine gene coverage by reads (bedtools)
Assembly: MacaM, INSDC Assembly GCA_003339765.3
Supplementary files format and content: comma-separated text file, read counts, gene coverage
|
| |
|
| Submission date |
Jan 29, 2023 |
| Last update date |
Feb 21, 2023 |
| Contact name |
Brian George Dias |
| Organization name |
Children's Hospital Los Angeles
|
| Department |
Division of Endocrinology
|
| Street address |
4650 Sunset Blvd
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90027 |
| Country |
USA |
| |
|
| Platform ID |
GPL23804 |
| Series (1) |
| GSE223984 |
Profiling non-human primate exosomal RNA to understand the legacy of early life stress |
|
| Relations |
| BioSample |
SAMN32954248 |
| SRA |
SRX19210865 |
