NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM701151 Query DataSets for GSM701151
Status Public on Jun 30, 2013
Title IMIM10
Sample type RNA
 
Source name Total RNA from PBMCS, nuts, 3 months
Organism Homo sapiens
Characteristics intervention: nuts
timepoint: 3 months
Extracted molecule total RNA
Extraction protocol Ultraspec RNA isolation system (Biotecx Laboratories)
Label Biotin
Label protocol 300 ng of total RNA were amplified and labeled using the 3ยด IVT Express Kit and control reagents (Affymetrix)
 
Hybridization protocol Sample was hybridized to Human Genome U133A 2.0 Array (Affymetrix) using a GeneChip Hybridization Oven 640
Scan protocol GeneChip was scanned using Affymetrix GeneChip Scanner 3000 7G
Description Gene expression data from Human peripheral blood mononuclear cells
Data processing The data were analyzed using the RMA algorithm and then SAM was applied to calculate significant differential expression between samples
 
Submission date Apr 04, 2011
Last update date Jun 30, 2013
Contact name Olga Castaner
E-mail(s) ocastaner@imim.es
Organization name IMIM
Department Nutrition and cardiovascular risk department
Lab Nutrtion and cardiovascular risk biomolecular laboratory
Street address Aiguader 88
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL571
Series (1)
GSE28358 Gene expression changes in human peripheral blood mononuclear cells after 3 diet interventions, TMD enriched with olive oil, TMD enriched with nuts and Low fat diet.

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
1007_s_at 3.80640281397832
1053_at 4.54569306969674
117_at 4.92426557014003
121_at 4.35871346380169
1255_g_at 0.578525280832531
1294_at 5.54432235848264
1316_at 2.73809459129343
1320_at 1.24982799151183
1405_i_at 10.0167308409871
1431_at 1.02595444314498
1438_at 1.69631873438612
1487_at 4.82619834117961
1494_f_at 1.79596557682793
1598_g_at 4.82529569799042
160020_at 3.28774399931388
1729_at 6.99195205538145
1773_at 2.42330983777277
177_at 1.71490350194548
179_at 5.05880578048145
1861_at 3.03608196027417

Total number of rows: 22277

Table truncated, full table size 609 Kbytes.




Supplementary file Size Download File type/resource
GSM701151.CEL.gz 1.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap