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Sample GSM701686 Query DataSets for GSM701686
Status Public on Apr 05, 2011
Title [E-MTAB-366] Chicken developmental stage HH1 1
Sample type RNA
 
Source name whole embryo except yolk and amnion, developmental stage HH1
Organism Gallus gallus
Characteristics biosource provider: local farmer (Shiroyama Keien) in Japan
developmental stage: HH1
genotype: wild type
organism part: whole embryo except yolk and amnion
Sex: mixed sex
strain or line: Nera
Growth protocol Parent chickens grown by Post Harvest Free Corn. Incubation at 37.5 degrees celsius.
Extracted molecule total RNA
Extraction protocol Total RNA extraction by RNeasy Lipid Tissue Mini Kit.
Label biotin
Label protocol 3' IVT Labeling
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing MAS5, default settings
 
Submission date Apr 05, 2011
Last update date Apr 05, 2011
Contact name Naoki Irie
Organization name RIKEN Center for Developmental Biology
Lab Laboratory for Evolutionary Morphology
Street address 2-2-3 Minatojima-minami Chuo-ku
City Kobe
State/province Hyogo
ZIP/Postal code 650-0047
Country Japan
 
Platform ID GPL3213
Series (2)
GSE28388 [E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages
GSE28391 Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

Data table header descriptions
ID_REF
VALUE MAS5
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AB112960.CDS1.S1_at 3.769227056 A
AF004856.CDS1.S1_s_at 12.66255377 A
AF004857.CDS1.S1_s_at 15.74643653 A
AF004857.CDS2.S1_s_at 8.558914019 A
AF004857.CDS3.S1_s_at 3.536512261 A
AF059716.CDS1.S1_at 3.259074746 A
AF059717.CDS1.S1_at 28.42172644 A
AF059721.CDS1.S1_at 6.120914469 A
AF059724.CDS1.S1_at 1.838819147 A
AF059725.CDS1.S1_at 23.38010825 A
AF176590.CDS1.S1_s_at 2.199921982 A
AF176591.CDS1.S1_s_at 11.58610227 A
AF176592.CDS1.S1_s_at 1.15335183 A
AF176592.CDS2.S1_s_at 11.34241828 P
AF218359.CDS1.S1_at 3.521850931 A
AF218359.CDS2.S1_at 3.782767146 A
AF218359.CDS3.S1_at 2.338339535 A
AF243438.CDS1.S1_s_at 21.77300633 A
AF243438.CDS10.S1_s_at 9.27137101 A
AF243438.CDS11.S1_s_at 1.736663064 A

Total number of rows: 38535

Table truncated, full table size 1266 Kbytes.




Supplementary file Size Download File type/resource
GSM701686_Chicken_HH1_1.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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