|
| Status |
Public on Apr 27, 2023 |
| Title |
WAF 72%, rep2 |
| Sample type |
SRA |
| |
|
| Source name |
whole larvae
|
| Organism |
Homarus americanus |
| Characteristics |
tissue: whole larvae
developmental stage: embryonic day 9
treatment: WAF 72%
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from homogenized whole larvae using Trizol
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
E82
|
| Data processing |
Processed using the Kallisto module or the Seq2Fun v.2 module on ExpressAnalyst.ca
Assembly: GMGI_Hamer_2.0 Homarus americanus genome assembly (GCA_018991925.1) for Kallisto module; EcoOmicsDB.ca for Seq2Fun v.2 module
Supplementary files format and content: Count table in a tab-delimited text file format with RefSeq IDs for Kallisto-processed data; Count table in a tab-delimited text file format with Seq2Fun IDs for Seq2Fun-processed data
|
| |
|
| Submission date |
Feb 22, 2023 |
| Last update date |
Apr 27, 2023 |
| Contact name |
Yeon-Seon Jeon |
| E-mail(s) |
yeon.jeon@mail.mcgill.ca
|
| Organization name |
McGill University
|
| Department |
Natural Resource Sciences
|
| Street address |
21111 Lakeshore
|
| City |
Ste-Anne-de-Bellevue |
| State/province |
Quebec |
| ZIP/Postal code |
H9X 3V9 |
| Country |
Canada |
| |
|
| Platform ID |
GPL33161 |
| Series (1) |
| GSE225876 |
ExpressAnalyst: a unified platform for RNA-seq analysis in non-model species |
|
| Relations |
| BioSample |
SAMN33419953 |
| SRA |
SRX19478192 |
