|
| Status |
Public on Apr 20, 2024 |
| Title |
DAY30_S1 |
| Sample type |
SRA |
| |
|
| Source name |
hiPSC-derived eye cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: induced pluripotent stem cells
time: Day 30
treatment: Ocular Differentiation
|
| Extracted molecule |
total RNA |
| Extraction protocol |
NovaSeq Reagent Kits v1.5
Illumina Stranded Total RNA Prep with with Ribo-Zero Plus
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
All the samples were sequenced on the NovaSeq 6000 System
Fastq files quality check was performed using FASTQC quality control tool.
Sequences were trimmed using Trimmomatic.
Assembly: hg38
Supplementary files format and content: csv file includes count values for each samples
Supplementary files format and content: csv file includes fpkm values for each samples
|
| |
|
| Submission date |
Mar 07, 2023 |
| Last update date |
Apr 20, 2024 |
| Contact name |
Burak Kahveci |
| E-mail(s) |
burakkahveci42@gmail.com
|
| Organization name |
Izmir Biomedicine and Genome Center
|
| Street address |
Izmir
|
| City |
Izmir |
| ZIP/Postal code |
33453 |
| Country |
Turkey |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE226816 |
Generation of Anterior Eye Cells from hiPSCs in Microfluidic Platforms |
|
| Relations |
| BioSample |
SAMN33611724 |
| SRA |
SRX19582543 |
