NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM7134038 Query DataSets for GSM7134038
Status Public on Mar 04, 2024
Title IBDU, SAMPLE 15
Sample type RNA
 
Source name FFPE IBDU
Organism Homo sapiens
Characteristics disease classification: IBDU_UC
age group: Adult
tissue: Mucosal tissue biopsies
Growth protocol Formalin fixed paraffin embedded tissue biopsies stored at room temperature
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using MagMAX™ FFPE DNA/RNA Ultra Kit from Applied Biosystems
Label biotin
Label protocol FlashTag Biotin HSR
 
Hybridization protocol Genechip Fluidics Station 450
Scan protocol Affymetrix GeneChip 7G scanner
Data processing analysis was done using RStudio with R version 4.2.2. Preprocessing were performed using robust multichip average (RMA) algorithm. Lowly expressed probe sets were removed, and batch correction was performed using ComBat batch correction.
 
Submission date Mar 30, 2023
Last update date Mar 04, 2024
Contact name Jaslin P James
E-mail(s) lene.buhl.riis@regionh.dk, jaslin.pallikkunnath.james@regionh.dk, jaslin.pj@gmail.com
Organization name Herlev hospital
Department Department of Pathology
Street address Borgmester Ib Juuls vej 1
City Herlev
ZIP/Postal code 2730
Country Denmark
 
Platform ID GPL19117
Series (1)
GSE228622 Short Noncoding RNAs as predictive biomarkers for the development from Inflammatory Bowel Disease Unclassified to Crohn’s Disease or Ulcerative Colitis

Data table header descriptions
ID_REF
VALUE log2 scale, RMA signal

Data table
ID_REF VALUE
14q0_st 1.39237772
14qI-1_st 2.622973774
14qI-1_x_st 1.967916907
14qI-2_st 0.951186562
14qI-3_x_st 1.38510017
14qI-4_st 1.949273349
14qI-4_x_st 2.257583366
14qI-5_st 1.229526667
14qI-6_st 0.997006926
14qI-7_st 2.260097371
14qI-8_st 1.097512433
14qI-8_x_st 1.428684162
14qI-9_x_st 0.983727783
14qII-1_st 5.279069959
14qII-1_x_st 5.227078213
14qII-10_st 0.880889038
14qII-11_st 0.859217321
14qII-12_st 1.825132918
14qII-12_x_st 2.31958854
14qII-13_st 1.175532746

Total number of rows: 36353

Table truncated, full table size 984 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.