|
Status |
Public on Apr 27, 2011 |
Title |
Gingeras_GM12878_1k |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
lab: GIS lab description: Ruan - Genome Institute of Singapore datatype: DnaPet datatype description: DNA Paired-End Tags cell: GM12878 cell organism: human cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus cell karyotype: normal cell lineage: mesoderm fragsize: 1k fragsize description: 1 kb DNA fragments
|
Biomaterial provider |
Coriell
|
Growth protocol |
Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisDnaPet
|
|
|
Library strategy |
OTHER |
Library source |
genomic |
Library selection |
size fractionation |
Instrument model |
AB SOLiD System 2.0 |
|
|
Data processing |
For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisDnaPet
|
|
|
Submission date |
Apr 26, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9138 |
Series (1) |
GSE28867 |
ENCODE Genome Institute of Singapore DNA Paired-End Ditags |
|
Relations |
SRA |
SRX058652 |
BioSample |
SAMN00260549 |