|
Status |
Public on Apr 07, 2023 |
Title |
RNAseq Adult Skate Intestine replicate 1 |
Sample type |
SRA |
|
|
Source name |
Intestine
|
Organism |
Leucoraja erinacea |
Characteristics |
tissue: Intestine developmental timing: Adult treatment: WT
|
Extracted molecule |
total RNA |
Extraction protocol |
total RNA was extracted from frozen samples by using the QIAGEN RNeasy Plus Micro Kit polyA-selected standard Illumina libraries
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
DNBSEQ-G400 |
|
|
Data processing |
Alignment with STAR Filtering of duplicated and not valid reads Read count per gene with htseq-count Assembly: custom assembly (uploaded in the same Bioproject) Supplementary files format and content: Tabular file, contains Gene ID, gene position and counts for each sample
|
|
|
Submission date |
Apr 07, 2023 |
Last update date |
Apr 17, 2023 |
Contact name |
Juan J. Tena |
E-mail(s) |
jjtenagu@upo.es
|
Organization name |
CABD/CSIC
|
Street address |
Univ. Pablo Olavide, Ctra. Utrera km1
|
City |
Sevilla |
ZIP/Postal code |
41013 |
Country |
Spain |
|
|
Platform ID |
GPL30966 |
Series (2) |
GSE188980 |
The little skate genome and the evolutionary emergence of wing-like fin appendages |
GSE229180 |
The little skate genome and the evolutionary emergence of wing-like fin appendages [RNA-seq, Adult] |
|
Relations |
SRA |
SRX19906024 |
BioSample |
SAMN34114888 |