|
| Status |
Public on Apr 07, 2023 |
| Title |
RNAseq Adult Skate Testis replicate 2 |
| Sample type |
SRA |
| |
|
| Source name |
Testis
|
| Organism |
Leucoraja erinacea |
| Characteristics |
tissue: Testis
developmental timing: Adult
treatment: WT
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA was extracted from frozen samples by using the QIAGEN RNeasy Plus Micro Kit
polyA-selected standard Illumina libraries
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
DNBSEQ-G400 |
| |
|
| Data processing |
Alignment with STAR
Filtering of duplicated and not valid reads
Read count per gene with htseq-count
Assembly: custom assembly (uploaded in the same Bioproject)
Supplementary files format and content: Tabular file, contains Gene ID, gene position and counts for each sample
|
| |
|
| Submission date |
Apr 07, 2023 |
| Last update date |
Apr 17, 2023 |
| Contact name |
Juan J. Tena |
| E-mail(s) |
jjtenagu@upo.es
|
| Organization name |
CABD/CSIC
|
| Street address |
Univ. Pablo Olavide, Ctra. Utrera km1
|
| City |
Sevilla |
| ZIP/Postal code |
41013 |
| Country |
Spain |
| |
|
| Platform ID |
GPL30966 |
| Series (2) |
| GSE188980 |
The little skate genome and the evolutionary emergence of wing-like fin appendages |
| GSE229180 |
The little skate genome and the evolutionary emergence of wing-like fin appendages [RNA-seq, Adult] |
|
| Relations |
| SRA |
SRX19906039 |
| BioSample |
SAMN34114873 |
