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Sample GSM725 Query DataSets for GSM725
Status Public on Nov 28, 2001
Title SAGE_MDA453
Sample type SAGE
Anchor NlaIII
Tag Count 19041
Tag Length 10
 
Source name Carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Description Cell line MDA-MB-453: Human breast carcinoma, malignant effusion. Estrogen receptor negative. From a 48 yo female on radiation and chemotherapy.
Sex: Female
Organ: Breast
Cell_type: Malignant effusion
Cell_line: MDA-MB-453
Library treatment: non-normalized
Tissue description: Cell line MDA-MB-453 of human breast carcinoma, malignant effusion, estrogen receptor negative, from patient treated with radiation and chemotherapy.
Tissue supplier: C. Marcelo Aldaz
Sample type: Cell line
Producer: Aldaz Laboratory
Clones generated to date: 0
Sequences generated to date: 543

This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Keywords = mammary gland
Keywords = adenocarcinoma
Keywords = SAGE
Keywords = cell line
Keywords = CGAP
Keywords = non-normalized
Keywords = SAGE library method
Keywords = cell line
 
Submission date Nov 28, 2001
Last update date May 28, 2005
Contact name C Marcelo Aldaz
E-mail(s) maldaz@odin.mdacc.tmc.edu
Phone 512-237-9530
URL http://sciencepark.mdanderson.org/ggeg
Organization name M.D. Anderson Cancer Center
Department Science Park Research Division, Carcinogenesis
Street address
City Smithville
State/province TX
ZIP/Postal code 78957
Country USA
 
Platform ID GPL4
Series (1)
GSE25748 SAGE analysis of normal human mammary epithelial cells, breast carcinoma (malignant effusion), and breast adenocarcinoma (malignant pleural effusion)

Data table header descriptions
TAG Ten base SAGE tag,
COUNT Absolute tag count
TPM Tags per million, or (1000000*COUNT)/(Total tags)

Data table
TAG COUNT TPM
ACTTTTTCAA 403 21164.9
CCCATCGTCC 179 9400.77
TTCATACACC 164 8612.99
CACCTAATTG 161 8455.44
GTGAAACCCC 141 7405.07
CTAAGACTTC 134 7037.45
AAAACATTCT 131 6879.89
CCTGTAATCC 120 6302.19
TGATTTCACT 114 5987.08
TTGGGGTTTC 88 4621.61
GTGAAACCCT 83 4359.01
CCACTGCACT 82 4306.5
ACCCTTGGCC 78 4096.42
AGCCCTACAA 78 4096.42
GGATTTGGCC 77 4043.91
AGGGCTTCCA 75 3938.87
CTCATAAGGA 72 3781.31
ACTAACACCC 64 3361.17
ATGGCTGGTA 57 2993.54
GCGACCGTCA 53 2783.47

Total number of rows: 9246

Table truncated, full table size 189 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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