|
| Status |
Public on Oct 14, 2024 |
| Title |
Arg_free_plus_TGFb1 |
| Sample type |
RNA |
| |
|
| Source name |
OT-1 cells activated in arginine-deficient culture medium with 5 ng/ml TGF-b stimulation for 2.5 days
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
cell line: OT-1
treatment: activated in arginine-deficient culture medium with 5 ng/ml TGF-b stimulation for 2.5 days
|
| Treatment protocol |
Sorted cells were lysed with lysis buffer from Rneasy Micro kit from Qiagen.
|
| Growth protocol |
OT-1 cells were activated in control or arginine-deficient culture medium with or without stimulation of 5 ng/ml TGF-b for 2.5 days
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA samples were prepared according to the prototol of Rneasy Micro kit from Qiagen,
|
| Label |
biotin
|
| Label protocol |
High-quality RNA was processed using Thermo Fisher (Affymetrix) Whole Transcript (WT) Plus assay kit
|
| |
|
| Hybridization protocol |
Labeled cDNA was included in a hybridization mix that was incubated on the Clariom S mouse array for 16 hours at 45◦c while rotating at 60 rpm.
|
| Scan protocol |
GeneChips were scanned using the AffymetrixGeneChip Scanner 3000 7G.
|
| Data processing |
Probe signals were quantile normalized and summarized by the RMA algorithm using the Affymetrix Expression Console software v1.1
|
| |
|
| Submission date |
Apr 30, 2023 |
| Last update date |
Oct 14, 2024 |
| Contact name |
Hongbo Chi |
| E-mail(s) |
hongbo.chi@stjude.org
|
| Organization name |
St Jude Children's Research Hospital
|
| Department |
Immunology
|
| Street address |
262 Danny Thomas Place
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platform ID |
GPL23038 |
| Series (2) |
| GSE231342 |
Interplay between nutrient stress and lysosomal signaling imprints immune memory in tissues [microarray4] |
| GSE231502 |
CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation |
|
