|
| Status |
Public on Dec 31, 2011 |
| Title |
14 day old bLR strain rat hippocampus, biological replicate 4 |
| Sample type |
RNA |
| |
|
| Source name |
Selectively-bred Low responder rat strain derived from Sprague Dawley stock, 14 days after birth
|
| Organism |
Rattus norvegicus |
| Characteristics |
strain: Selectively bred Low Responder (derived from an original Sprague Dawley)
tissue: Hippocampus
age: 14 days after birth
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
P14_LR_HPC_L04
Gene expression data from hippocampus of selectively-bred sprague dawley rats (Low Reponder strain), 14 days after birth
|
| Data processing |
To account for recent advances in annotation and accuracy of rat genome bioinformatics, GeneChip data were interpreted using a custom cdf (filename RUG34A_Rn_UG), which groups individual probes from the GeneChip into newly defined probe sets based on a very recent version of UniGene (build updated 6th July 2010). Data were analyzed by RMA in Bioconductor.
|
| |
|
| Submission date |
May 26, 2011 |
| Last update date |
Dec 31, 2011 |
| Contact name |
Sarah Megan Clinton |
| E-mail(s) |
clintons@uab.edu
|
| Organization name |
University of Alabama-Birmigham
|
| Department |
Psychiatry and Behavioral Neurobiology
|
| Lab |
Clinton Lab
|
| Street address |
1720 7th Avenue South, SC 745
|
| City |
Birmingham |
| State/province |
Alabama |
| ZIP/Postal code |
35294 |
| Country |
USA |
| |
|
| Platform ID |
GPL13653 |
| Series (1) |
| GSE29552 |
Developmental underpinnings of differences in rodent novelty-seeking and emotional reactivity |
|
