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Sample GSM733926 Query DataSets for GSM733926
Status Public on May 30, 2011
Title Primary MMTV-Neu Tumor N86
Sample type RNA
 
Source name Mouse Mammary Tumor
Organism Mus musculus
Characteristics strain: FvB
size: Mammary Tumor less than 1.0 cm diameter
tissue: Primary MMTV-Neu Mammary Tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Gene expression data from primary MMTV-Neu tumor
Data processing The data were normalised using quantile normalization with BeadStudio
 
Submission date May 29, 2011
Last update date May 30, 2011
Contact name Jeff Liu
E-mail(s) jeff.liu@utoronto.ca
Phone 416-340-4800
Organization name University Health Network
Department Princess Margaret Cancer Center
Lab Zadeh Lab
Street address 101 College Street, RM 4-601
City Toronto
State/province Ontario
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL6885
Series (1)
GSE29616 Gene expression of primary MMTV-Neu tumors compared to secondary tumors generated from lin- and single tumor initiating cell (TIC) transplantation

Data table header descriptions
ID_REF
VALUE quantile normalized
N86 Detection Pval

Data table
ID_REF VALUE N86 Detection Pval
ILMN_2896528 9655.932 0
ILMN_2721178 2236.531 0
ILMN_3033922 1413.723 0
ILMN_3092673 10696.01 0
ILMN_2816356 203.3997 0
ILMN_2808939 823.2382 0
ILMN_2634564 1018.671 0
ILMN_2737647 131.5019 0.1929825
ILMN_2734484 1114.453 0
ILMN_2952292 371.473 0
ILMN_2699078 115.1646 0.5137845
ILMN_1213681 848.0094 0
ILMN_2735413 116.4202 0.4849624
ILMN_2735415 143.672 0.08646616
ILMN_2891688 664.782 0
ILMN_2637698 1929.326 0
ILMN_2674228 346.5333 0
ILMN_2601546 123.7792 0.2957394
ILMN_1230831 141.1753 0.09649123
ILMN_2848071 157.0619 0.03634085

Total number of rows: 25697

Table truncated, full table size 721 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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