NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM736529 Query DataSets for GSM736529
Status Public on Jun 03, 2011
Title Stam_NB4_2
Sample type SRA
 
Source name NB4
Organism Homo sapiens
Characteristics cell: NB4
cell organism: Human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell sex: U
replicate: 2
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Yale_TFBS:NB4_protocol.pdf UW_Stam:NB4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069122
BioSample SAMN00622247
Named Annotation GSM736529_hg19_wgEncodeUwDnaseNb4RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736529_hg19_wgEncodeUwDnaseNb4AlnRep2.bam 1.4 Gb (ftp)(http) BAM
GSM736529_hg19_wgEncodeUwDnaseNb4HotspotsRep2.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM736529_hg19_wgEncodeUwDnaseNb4PkRep2.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM736529_hg19_wgEncodeUwDnaseNb4RawRep2.bigWig 173.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap