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GEO accession:
Sample GSM736539
Query DataSets for GSM736539
Status
Public on Jun 03, 2011
Title
Stam_RPTEC_2
Sample type
SRA
Source name
RPTEC
Organism
Homo sapiens
Characteristics
cell: RPTEC
cell organism: Human
cell description: Renal Proximal Tubule Epithelial Cells
cell sex: U
replicate: 2
Biomaterial provider
Lonza
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:RPTEC_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
Submission date
Jun 02, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE29692
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by
GSE53962
Reanalyzed by
GSE54296
Reanalyzed by
GSE59016
SRA
SRX069132
BioSample
SAMN00622257
Named Annotation
GSM736539_hg19_wgEncodeUwDnaseRptecRawRep2.bigWig
Supplementary file
Size
Download
File type/resource
GSM736539_hg19_wgEncodeUwDnaseRptecAlnRep2.bam
1.4 Gb
(ftp)
(http)
BAM
GSM736539_hg19_wgEncodeUwDnaseRptecHotspotsRep2.broadPeak.gz
3.7 Mb
(ftp)
(http)
BROADPEAK
GSM736539_hg19_wgEncodeUwDnaseRptecPkRep2.narrowPeak.gz
2.0 Mb
(ftp)
(http)
NARROWPEAK
GSM736539_hg19_wgEncodeUwDnaseRptecRawRep2.bigWig
168.6 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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