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Sample GSM736565

Query DataSets for GSM736565

Status

Public on Jun 03, 2011

Title

Stam_LNCaP_1

Sample type

SRA

Source name

LNCaP

Organism

Homo sapiens

Characteristics

cell: LNCaP
cell organism: Human
cell description: prostate adenocarcinoma, "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old Caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
replicate: 1

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Duke/UNC/UTA/EBI_Open_Chromatin:LNCaP_Crawford_protocol.pdf Yale_TFBS(Farnham):LNCaP_protocol.pdf UW_Stam:LNCaP_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736565_hg19_wgEncodeUwDnaseLncapRawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736565_hg19_wgEncodeUwDnaseLncapAlnRep1.bam	1.6 Gb	(ftp)(http)	BAM
GSM736565_hg19_wgEncodeUwDnaseLncapHotspotsRep1.broadPeak.gz	3.1 Mb	(ftp)(http)	BROADPEAK
GSM736565_hg19_wgEncodeUwDnaseLncapPkRep1.narrowPeak.gz	2.0 Mb	(ftp)(http)	NARROWPEAK
GSM736565_hg19_wgEncodeUwDnaseLncapRawRep1.bigWig	142.5 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file