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Sample GSM736584

Query DataSets for GSM736584

Status

Public on Jun 03, 2011

Title

Stam_NH-A_2

Sample type

SRA

Source name

NH-A

Organism

Homo sapiens

Characteristics

donor_id: ENCDO916IIE
biomaterial_type: primary cell
cell_type: astrocyte
cell: NH-A
cell organism: Human
cell description: normal human astrocytes
cell sex: U
replicate: 2

Biomaterial provider

Lonza

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Broad:NH-A_Bernstein_protocol.pdf UW_Stam: NH-A_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (1)

GSE29692

DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736584_hg19_wgEncodeUwDnaseNhaRawRep2.bigWig

Supplementary file	Size	Download	File type/resource
GSM736584_hg19_wgEncodeUwDnaseNhaAlnRep2.bam	968.2 Mb	(ftp)(http)	BAM
GSM736584_hg19_wgEncodeUwDnaseNhaHotspotsRep2.broadPeak.gz	3.5 Mb	(ftp)(http)	BROADPEAK
GSM736584_hg19_wgEncodeUwDnaseNhaPkRep2.narrowPeak.gz	1.7 Mb	(ftp)(http)	NARROWPEAK
GSM736584_hg19_wgEncodeUwDnaseNhaRawRep2.bigWig	144.5 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file