GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM736593

Query DataSets for GSM736593

Status

Public on Jun 03, 2011

Title

Stam_SKMC_1

Sample type

SRA

Source name

SKMC

Organism

Homo sapiens

Characteristics

cell: SKMC
cell organism: Human
cell description: Human Skeletal Muscle Cells
cell karyotype: unknown
cell lineage: mesoderm
cell sex: U
replicate: 1

Biomaterial provider

Lonza

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:SkMC_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736593_hg19_wgEncodeUwDnaseSkmcRawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736593_hg19_wgEncodeUwDnaseSkmcAlnRep1.bam	1.1 Gb	(ftp)(http)	BAM
GSM736593_hg19_wgEncodeUwDnaseSkmcHotspotsRep1.broadPeak.gz	3.2 Mb	(ftp)(http)	BROADPEAK
GSM736593_hg19_wgEncodeUwDnaseSkmcPkRep1.narrowPeak.gz	2.2 Mb	(ftp)(http)	NARROWPEAK
GSM736593_hg19_wgEncodeUwDnaseSkmcRawRep1.bigWig	93.3 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file