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Sample GSM736613

Query DataSets for GSM736613

Status

Public on Jun 03, 2011

Title

Stam_WI-38_1

Sample type

SRA

Source name

WI-38

Organism

Homo sapiens

Characteristics

cell: WI-38
cell organism: human
cell description: Embryonic Lung Fibroblast Cells, hTERT immortalized, includes Raf1 construct
cell karyotype: Normal (RAF)
cell lineage: Fibroblast
cell sex: F
replicate: 1

Biomaterial provider

Dr. Carl Mann, SBIGeM

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:WI38_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736613_hg19_wgEncodeUwDnaseWi38RawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736613_hg19_wgEncodeUwDnaseWi38AlnRep1.bam	979.9 Mb	(ftp)(http)	BAM
GSM736613_hg19_wgEncodeUwDnaseWi38HotspotsRep1.broadPeak.gz	2.6 Mb	(ftp)(http)	BROADPEAK
GSM736613_hg19_wgEncodeUwDnaseWi38PkRep1.narrowPeak.gz	1.8 Mb	(ftp)(http)	NARROWPEAK
GSM736613_hg19_wgEncodeUwDnaseWi38RawRep1.bigWig	101.0 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file