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Sample GSM736620

Query DataSets for GSM736620

Status

Public on Jun 03, 2011

Title

Stam_GM12878_2

Sample type

SRA

Source name

GM12878

Organism

Homo sapiens

Characteristics

biomaterial_type: immortalized cell line
line: GM12878
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
replicate: 2

Biomaterial provider

Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (2)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736620_hg19_wgEncodeUwDnaseGm12878RawRep2.bigWig

Supplementary file	Size	Download	File type/resource
GSM736620_hg19_wgEncodeUwDnaseGm12878AlnRep2.bam	959.2 Mb	(ftp)(http)	BAM
GSM736620_hg19_wgEncodeUwDnaseGm12878HotspotsRep2.broadPeak.gz	3.4 Mb	(ftp)(http)	BROADPEAK
GSM736620_hg19_wgEncodeUwDnaseGm12878PkRep2.narrowPeak.gz	1.3 Mb	(ftp)(http)	NARROWPEAK
GSM736620_hg19_wgEncodeUwDnaseGm12878RawRep2.bigWig	152.6 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file