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Sample GSM736629

Query DataSets for GSM736629

Status

Public on Jun 03, 2011

Title

Stam_K562_1

Sample type

SRA

Source name

K562

Organism

Homo sapiens

Characteristics

cell: K562
cell organism: Human
cell description: leukemia
cell karyotype: cancer
cell lineage: "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex: F
replicate: 1

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/K562_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase

Submission date

Jun 02, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (3)

GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

Relations

Reanalyzed by

Reanalyzed by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM736629_hg19_wgEncodeUwDnaseK562RawRep1.bigWig

Supplementary file	Size	Download	File type/resource
GSM736629_hg19_wgEncodeUwDnaseK562AlnRep1.bam	1.4 Gb	(ftp)(http)	BAM
GSM736629_hg19_wgEncodeUwDnaseK562HotspotsRep1.broadPeak.gz	3.5 Mb	(ftp)(http)	BROADPEAK
GSM736629_hg19_wgEncodeUwDnaseK562PkRep1.narrowPeak.gz	1.7 Mb	(ftp)(http)	NARROWPEAK
GSM736629_hg19_wgEncodeUwDnaseK562RawRep1.bigWig	135.5 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file