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Sample GSM736670 Query DataSets for GSM736670
Status Public on Jul 01, 2012
Title 132427
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B1
category: GII
batch group: BATCH 1
stage i/ii, iii/iv, or na = not applicable/unknown: III_IV
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: NA
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4578168010_D
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 134.2 0.05178
ILMN_2055271 292.2 0.00324
ILMN_2383229 114.2 0.08091
ILMN_1806310 67.4 0.46926
ILMN_1779670 214.7 0.01618
ILMN_2321282 122.3 0.06149
ILMN_1772582 630.1 0
ILMN_1717783 98.7 0.11974
ILMN_1814316 1049 0
ILMN_2359168 1001.2 0
ILMN_1731507 58.2 0.68932
ILMN_1787689 82.3 0.22006
ILMN_1745607 4359.8 0
ILMN_2136495 115.3 0.07443
ILMN_1668111 163 0.03236
ILMN_2295559 110.1 0.09061
ILMN_1735045 120.4 0.06796
ILMN_1680754 68 0.45955
ILMN_2375184 111.7 0.09061
ILMN_1659452 144.2 0.04531

Total number of rows: 24526

Table truncated, full table size 565 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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