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Sample GSM736671 Query DataSets for GSM736671
Status Public on Jul 01, 2012
Title 132401
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B1
category: GII
batch group: BATCH 1
stage i/ii, iii/iv, or na = not applicable/unknown: III_IV
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: YES
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4578168010_E
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 147 0.05178
ILMN_2055271 192.3 0.02265
ILMN_2383229 89.6 0.24919
ILMN_1806310 62.9 0.76052
ILMN_1779670 75.4 0.4822
ILMN_2321282 78.5 0.40777
ILMN_1772582 102.4 0.14887
ILMN_1717783 83.4 0.33657
ILMN_1814316 186.2 0.02589
ILMN_2359168 148.5 0.05178
ILMN_1731507 41.9 1
ILMN_1787689 93 0.21036
ILMN_1745607 5547.8 0
ILMN_2136495 86.4 0.28479
ILMN_1668111 118.4 0.09385
ILMN_2295559 110.7 0.12945
ILMN_1735045 185.1 0.02589
ILMN_1680754 74.9 0.49191
ILMN_2375184 121.6 0.08414
ILMN_1659452 145.4 0.05502

Total number of rows: 24526

Table truncated, full table size 569 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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