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Sample GSM736676 Query DataSets for GSM736676
Status Public on Jul 01, 2012
Title TThy6-6-Dupl
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Cell Line
type: CL
category: CL
batch group: BATCH 1
stage i/ii, iii/iv, or na = not applicable/unknown: NA
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: NA
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4578168026_F
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 200.7 0.02265
ILMN_2055271 146.8 0.05825
ILMN_2383229 88.8 0.42395
ILMN_1806310 73.7 0.72168
ILMN_1779670 85.7 0.46602
ILMN_2321282 90.4 0.39159
ILMN_1772582 107.5 0.15534
ILMN_1717783 92.8 0.34951
ILMN_1814316 84.3 0.49838
ILMN_2359168 97.4 0.26537
ILMN_1731507 60.2 0.94822
ILMN_1787689 113.2 0.12298
ILMN_1745607 121.4 0.10032
ILMN_2136495 94.6 0.29773
ILMN_1668111 61.5 0.91586
ILMN_2295559 85.8 0.45955
ILMN_1735045 736.2 0
ILMN_1680754 90.1 0.39806
ILMN_2375184 105.3 0.17799
ILMN_1659452 144.5 0.05825

Total number of rows: 24526

Table truncated, full table size 579 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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