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Sample GSM736677 Query DataSets for GSM736677
Status Public on Jul 01, 2012
Title 132454
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B2
category: GII
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726050_A
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 135.4 0.14563
ILMN_2055271 347.2 0.00971
ILMN_2383229 132 0.17152
ILMN_1806310 92.4 0.75728
ILMN_1779670 125.2 0.20388
ILMN_2321282 98 0.64401
ILMN_1772582 215.6 0.02913
ILMN_1717783 128 0.19741
ILMN_1814316 539.6 0.00324
ILMN_2359168 477.7 0.00324
ILMN_1731507 83.4 0.93204
ILMN_1787689 128.6 0.1877
ILMN_1745607 4530.3 0
ILMN_2136495 97.3 0.65049
ILMN_1668111 89.7 0.81877
ILMN_2295559 100.6 0.57929
ILMN_1735045 160.8 0.07767
ILMN_1680754 129.2 0.1877
ILMN_2375184 145.1 0.10356
ILMN_1659452 158 0.07767

Total number of rows: 24526

Table truncated, full table size 609 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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