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Sample GSM736680 Query DataSets for GSM736680
Status Public on Jul 01, 2012
Title 132467
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: Mixed AB
category: GI
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726050_E
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 138.8 0.27184
ILMN_2055271 226.9 0.0356
ILMN_2383229 144.4 0.20712
ILMN_1806310 120.2 0.55663
ILMN_1779670 130 0.39482
ILMN_2321282 106.4 0.80906
ILMN_1772582 142.3 0.23301
ILMN_1717783 134.5 0.31392
ILMN_1814316 133.1 0.3301
ILMN_2359168 124.2 0.46926
ILMN_1731507 97 0.95469
ILMN_1787689 150 0.17476
ILMN_1745607 6330.6 0
ILMN_2136495 111.2 0.71197
ILMN_1668111 98.7 0.9288
ILMN_2295559 116.3 0.63754
ILMN_1735045 1078 0
ILMN_1680754 132.2 0.33981
ILMN_2375184 132 0.34628
ILMN_1659452 165 0.11327

Total number of rows: 24526

Table truncated, full table size 611 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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