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Sample GSM736681 Query DataSets for GSM736681
Status Public on Jul 01, 2012
Title 132411
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B3
category: GIII
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: III_IV
relapse no, yes, or na = not applicable/unknown: YES
metastasis no, yes, or na = not applicable/unknown: YES
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726050_F
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 377.7 0.00647
ILMN_2055271 1009.3 0
ILMN_2383229 135.8 0.27832
ILMN_1806310 108.3 0.76699
ILMN_1779670 1314.6 0
ILMN_2321282 153.1 0.12945
ILMN_1772582 260.8 0.01294
ILMN_1717783 169.8 0.07767
ILMN_1814316 2847.5 0
ILMN_2359168 2135.2 0
ILMN_1731507 87.2 0.97735
ILMN_1787689 383.6 0.00647
ILMN_1745607 3249.9 0
ILMN_2136495 714.2 0.00324
ILMN_1668111 103.3 0.84466
ILMN_2295559 1838.9 0
ILMN_1735045 349.9 0.00971
ILMN_1680754 128.6 0.35922
ILMN_2375184 1093.4 0
ILMN_1659452 805.1 0.00324

Total number of rows: 24526

Table truncated, full table size 596 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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