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Sample GSM736684 Query DataSets for GSM736684
Status Public on Jul 01, 2012
Title 132484
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: Mixed AB
category: GI
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726051_A
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 117 0.34304
ILMN_2055271 419.2 0.00324
ILMN_2383229 115.9 0.37864
ILMN_1806310 117.4 0.33981
ILMN_1779670 141.9 0.13269
ILMN_2321282 101.5 0.67638
ILMN_1772582 159.3 0.08414
ILMN_1717783 111.5 0.44984
ILMN_1814316 117.7 0.33981
ILMN_2359168 121.9 0.27832
ILMN_1731507 69.6 1
ILMN_1787689 135.8 0.16505
ILMN_1745607 4515 0
ILMN_2136495 89.2 0.90615
ILMN_1668111 98.5 0.7411
ILMN_2295559 109.6 0.47573
ILMN_1735045 337.2 0.00971
ILMN_1680754 115.6 0.39159
ILMN_2375184 125.2 0.24595
ILMN_1659452 152.9 0.09709

Total number of rows: 24526

Table truncated, full table size 608 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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