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Sample GSM736685 Query DataSets for GSM736685
Status Public on Jul 01, 2012
Title 132475
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B3
category: GIII
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: YES
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726051_B
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 230.2 0.03236
ILMN_2055271 651.6 0.00324
ILMN_2383229 276.2 0.01618
ILMN_1806310 124.4 0.31392
ILMN_1779670 311.1 0.01294
ILMN_2321282 117.2 0.39482
ILMN_1772582 216 0.03236
ILMN_1717783 132.9 0.21683
ILMN_1814316 491.9 0.00647
ILMN_2359168 437 0.00971
ILMN_1731507 82.9 0.97735
ILMN_1787689 131.3 0.22977
ILMN_1745607 6465.7 0
ILMN_2136495 338.1 0.01294
ILMN_1668111 499.9 0.00324
ILMN_2295559 707.8 0.00324
ILMN_1735045 163 0.08414
ILMN_1680754 123 0.32362
ILMN_2375184 335.1 0.01294
ILMN_1659452 324.4 0.01294

Total number of rows: 24526

Table truncated, full table size 608 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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