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Sample GSM736689 Query DataSets for GSM736689
Status Public on Jul 01, 2012
Title 132236
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B1
category: GII
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: III_IV
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: YES
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726051_G
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 162.6 0.1877
ILMN_2055271 276.4 0.01942
ILMN_2383229 165.3 0.16505
ILMN_1806310 134.1 0.63754
ILMN_1779670 151.7 0.2945
ILMN_2321282 135.3 0.60194
ILMN_1772582 148.1 0.35922
ILMN_1717783 155.6 0.22977
ILMN_1814316 136.4 0.57929
ILMN_2359168 144.3 0.41748
ILMN_1731507 106.4 0.97411
ILMN_1787689 136.2 0.57929
ILMN_1745607 4360.4 0
ILMN_2136495 113.3 0.92557
ILMN_1668111 155.2 0.23301
ILMN_2295559 142.4 0.46926
ILMN_1735045 161.6 0.19741
ILMN_1680754 156.1 0.22654
ILMN_2375184 269.8 0.02265
ILMN_1659452 270.3 0.02265

Total number of rows: 24526

Table truncated, full table size 615 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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