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Sample GSM736690 Query DataSets for GSM736690
Status Public on Jul 01, 2012
Title 132484-Dupl.
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: Mixed AB
category: GI
batch group: BATCH 2
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4616726051_H
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 173.7 0.08738
ILMN_2055271 637.3 0.00324
ILMN_2383229 125.3 0.52427
ILMN_1806310 125.5 0.5178
ILMN_1779670 276.4 0.01942
ILMN_2321282 115.7 0.74757
ILMN_1772582 185.1 0.06472
ILMN_1717783 183.3 0.06472
ILMN_1814316 138.5 0.29773
ILMN_2359168 140.1 0.26861
ILMN_1731507 108.2 0.87055
ILMN_1787689 145.9 0.22006
ILMN_1745607 5534.2 0
ILMN_2136495 560.3 0.00324
ILMN_1668111 106.7 0.8932
ILMN_2295559 1125.3 0
ILMN_1735045 322.2 0.00971
ILMN_1680754 161.4 0.12945
ILMN_2375184 908.6 0.00324
ILMN_1659452 748 0.00324

Total number of rows: 24526

Table truncated, full table size 609 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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