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Sample GSM736691 Query DataSets for GSM736691
Status Public on Jul 01, 2012
Title 132268
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B2
category: GII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: NA
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345011_B
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 98.7 0.06149
ILMN_2055271 340.9 0
ILMN_2383229 67.2 0.11327
ILMN_1806310 46.7 0.34628
ILMN_1779670 209.1 0.00971
ILMN_2321282 87.9 0.0712
ILMN_1772582 325.4 0
ILMN_1717783 63.5 0.14239
ILMN_1814316 987.9 0
ILMN_2359168 851.4 0
ILMN_1731507 60.4 0.15534
ILMN_1787689 71.7 0.09709
ILMN_1745607 3387.4 0
ILMN_2136495 281.6 0.00647
ILMN_1668111 1246.9 0
ILMN_2295559 1133.1 0
ILMN_1735045 888.4 0
ILMN_1680754 59.6 0.16181
ILMN_2375184 432.3 0
ILMN_1659452 401.6 0

Total number of rows: 24526

Table truncated, full table size 554 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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