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Sample GSM736693 Query DataSets for GSM736693
Status Public on Jul 01, 2012
Title 132409
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B1
category: GII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345011_D
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 106.7 0.04531
ILMN_2055271 1050.4 0
ILMN_2383229 136 0.02913
ILMN_1806310 46.8 0.32686
ILMN_1779670 308.3 0.00324
ILMN_2321282 75.1 0.08738
ILMN_1772582 158.5 0.02265
ILMN_1717783 71.7 0.1068
ILMN_1814316 1441.7 0
ILMN_2359168 1322.7 0
ILMN_1731507 26.3 0.82201
ILMN_1787689 84 0.0712
ILMN_1745607 1570.2 0
ILMN_2136495 395.4 0
ILMN_1668111 1472 0
ILMN_2295559 1818.3 0
ILMN_1735045 121.7 0.04207
ILMN_1680754 91.9 0.05502
ILMN_2375184 393.7 0
ILMN_1659452 388.6 0

Total number of rows: 24526

Table truncated, full table size 547 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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