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Sample GSM736699 Query DataSets for GSM736699
Status Public on Jul 01, 2012
Title 132410
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B1/B2
category: GII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: III_IV
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345012_C
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 59.9 0.24272
ILMN_2055271 173.4 0.01618
ILMN_2383229 47.5 0.43366
ILMN_1806310 37.4 0.73139
ILMN_1779670 56.8 0.28155
ILMN_2321282 49.1 0.40777
ILMN_1772582 63.4 0.20065
ILMN_1717783 54.3 0.30421
ILMN_1814316 2247 0
ILMN_2359168 2012.4 0
ILMN_1731507 73.3 0.13592
ILMN_1787689 61.1 0.22977
ILMN_1745607 2142.1 0
ILMN_2136495 42.7 0.589
ILMN_1668111 45.6 0.47249
ILMN_2295559 47 0.44337
ILMN_1735045 106.8 0.05825
ILMN_1680754 44.9 0.49838
ILMN_2375184 94.1 0.0712
ILMN_1659452 116.4 0.04531

Total number of rows: 24526

Table truncated, full table size 568 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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