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Sample GSM736703 Query DataSets for GSM736703
Status Public on Jul 01, 2012
Title 132477
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B2
category: GII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345012_H
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 288.3 0.00324
ILMN_2055271 198.5 0.01294
ILMN_2383229 54.5 0.26214
ILMN_1806310 25.6 0.87702
ILMN_1779670 49.7 0.33657
ILMN_2321282 40.5 0.52104
ILMN_1772582 211.5 0.00971
ILMN_1717783 71.4 0.1165
ILMN_1814316 72.7 0.1068
ILMN_2359168 72.2 0.1165
ILMN_1731507 21.9 0.95146
ILMN_1787689 50.5 0.32686
ILMN_1745607 3074.6 0
ILMN_2136495 562.9 0
ILMN_1668111 42.1 0.48544
ILMN_2295559 55.1 0.24919
ILMN_1735045 50.8 0.32039
ILMN_1680754 30.2 0.79612
ILMN_2375184 147.1 0.02589
ILMN_1659452 157.7 0.02265

Total number of rows: 24526

Table truncated, full table size 564 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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