NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM736707 Query DataSets for GSM736707
Status Public on Jul 01, 2012
Title 132408
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B3
category: GIII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NO
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345055_E
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 78.1 0.13269
ILMN_2055271 158.8 0.02265
ILMN_2383229 70.9 0.20712
ILMN_1806310 49.5 0.60518
ILMN_1779670 54 0.46602
ILMN_2321282 46.4 0.70874
ILMN_1772582 93.5 0.07443
ILMN_1717783 55.1 0.44013
ILMN_1814316 50.4 0.5534
ILMN_2359168 58.4 0.37864
ILMN_1731507 30.2 1
ILMN_1787689 69.2 0.2233
ILMN_1745607 2071.4 0
ILMN_2136495 29.2 1
ILMN_1668111 48 0.65696
ILMN_2295559 56 0.42395
ILMN_1735045 205.5 0.01294
ILMN_1680754 58.1 0.38835
ILMN_2375184 77.3 0.13592
ILMN_1659452 90.3 0.09061

Total number of rows: 24526

Table truncated, full table size 581 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap