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Sample GSM736709 Query DataSets for GSM736709
Status Public on Jul 01, 2012
Title 132472
Sample type RNA
 
Source name Thymus
Organism Homo sapiens
Characteristics tissue: Fresh Frozen Human Tumors
type: B2
category: GII
batch group: BATCH 3
stage i/ii, iii/iv, or na = not applicable/unknown: I_II
relapse no, yes, or na = not applicable/unknown: NA
metastasis no, yes, or na = not applicable/unknown: NO
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzolĀ® Reagent method (Invitrogen, Carlsbad, CA) according to the manufacturer?s instructions. All RNA samples were treated with Turbo DNaseĀ® (Ambion/Applied Biosystems, Foster City, CA).
Label biotin
Label protocol Illumina Default WG-DASL Protocol
 
Hybridization protocol Illumina Default WG-DASL Protocol
Scan protocol Illumina Default WG-DASL Protocol
Description 4635345055_G
Data processing Image files from Illumina WG-DASL beadchips were processed using Illumina GenomeStudio to get non-normalized and average normalized probe profiles.
 
Submission date Jun 02, 2011
Last update date Jul 01, 2012
Contact name Sunil Badve
E-mail(s) cgoswami@iupui.edu
Organization name Indiana University
Department Pathology
Street address 350 West 11th street
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL8432
Series (1)
GSE29695 Gene Expression Analysis of Thymic Neoplasms

Data table header descriptions
ID_REF
VALUE average normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 64.6 0.18123
ILMN_2055271 326.8 0.00647
ILMN_2383229 68.5 0.14887
ILMN_1806310 51.6 0.32686
ILMN_1779670 55.5 0.28155
ILMN_2321282 36.1 0.73786
ILMN_1772582 67.2 0.15534
ILMN_1717783 48.7 0.39159
ILMN_1814316 132 0.03883
ILMN_2359168 132.2 0.03883
ILMN_1731507 29.7 0.90615
ILMN_1787689 56.8 0.27184
ILMN_1745607 5431.3 0
ILMN_2136495 94.7 0.06472
ILMN_1668111 40.3 0.60841
ILMN_2295559 45.2 0.45307
ILMN_1735045 114.3 0.05825
ILMN_1680754 48.7 0.39159
ILMN_2375184 70.8 0.14563
ILMN_1659452 90.6 0.06796

Total number of rows: 24526

Table truncated, full table size 577 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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