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GEO help: Mouse over screen elements for information. |
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Status |
Public on Nov 29, 2005 |
Title |
UNC HNSCC02-0478 |
Sample type |
RNA |
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Source name |
HNSCC from FFPE block
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Organism |
Homo sapiens |
Characteristics |
HNSCC from FFPE block
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Extracted molecule |
total RNA |
Extraction protocol |
Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA)
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Label |
ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
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Description |
HNSCC from FFPE block
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Data processing |
quantile normalization of CEL file, PDNN (PerfectMatch) estimation, log2 transformation
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Submission date |
Sep 09, 2005 |
Last update date |
Aug 28, 2018 |
Contact name |
Christine H. Chung |
E-mail(s) |
christine.chung@vanderbilt.edu
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Phone |
615-322-4967
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Fax |
615343-7602
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Organization name |
Vanderbilt University
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Department |
Internal Medicine
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Lab |
Chung
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Street address |
777 PRB
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City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37232-6307 |
Country |
USA |
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Platform ID |
GPL570 |
Series (1) |
GSE3292 |
Gene expression signature of HPV in head and neck squamous cell carcinoma |
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Relations |
Reanalyzed by |
GSE119087 |
Data table header descriptions |
ID_REF |
probeset IDs from the Affymetrix U-133 Plus 2.0 array |
VALUE |
Quantile normalization of CEL file, PDNN probeset estimates, log2 transformation |
Data table |
ID_REF |
VALUE |
210821_x_at |
7.461 |
1569793_at |
7.857 |
1561523_at |
7.721 |
1570222_at |
7.582 |
34764_at |
8.696 |
217754_at |
8.371 |
243388_at |
7.77 |
221938_x_at |
8.295 |
243829_at |
7.781 |
235688_s_at |
8.087 |
217536_x_at |
8.985 |
1564315_at |
7.901 |
226180_at |
9.015 |
1556543_at |
8.111 |
208429_x_at |
7.946 |
40273_at |
7.883 |
224510_s_at |
7.367 |
1560548_at |
7.662 |
214839_at |
7.803 |
217203_at |
8.211 |
Total number of rows: 54675
Table truncated, full table size 894 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM73687.CEL.gz |
4.5 Mb |
(ftp)(http) |
CEL |
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